PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC34520_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 84aa    MW: 9282.98 Da    PI: 11.8177
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC34520_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.6e-0526601655
                 HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 +N +   L +l+P +     +K s   iLe+A++YI+ L+
  RrC34520_p1 26 VNRKVRVLGRLVPGC-----RKESVPVILEEATDYIQALE 60
                 566666677777777.....899999***********985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.8421059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-91080IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-82672IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
GGGGRRSWKK RRVTVVKLNK KSIPTVNRKV RVLGRLVPGC RKESVPVILE EATDYIQALE  60
MQVRAMKSLA ELLSGSNSAP TRPI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013648027.15e-43PREDICTED: transcription factor bHLH148-like isoform X2
RefseqXP_013648020.15e-43PREDICTED: transcription factor bHLH148-like isoform X1
SwissprotQ9C8Z92e-32BH148_ARATH; Transcription factor bHLH148
TrEMBLM4FGQ02e-42M4FGQ0_BRARP; Uncharacterized protein
STRINGBra040278.1-P5e-42(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61571318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06590.27e-34bHLH family protein